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    LOC4336257 eIF-2-alpha kinase GCN2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336257, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4336257
    Gene description
    eIF-2-alpha kinase GCN2
    Locus tag
    OSNPB_040492500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 25.1), roots after flowering (RPKM 22.7) and 6 other tissues See more
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    Genomic context

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    See LOC4336257 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24615516..24636335)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase III subunit 1 Neighboring gene uncharacterized LOC4336255 Neighboring gene probable calcium-binding protein CML22 Neighboring gene uncharacterized CRM domain-containing protein At3g25440, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    eIF-2-alpha kinase GCN2
    Names
    Os04g0492500
    Os04g0492600
    probable serine/threonine-protein kinase GCN2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      24615516..24636335
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780845.2 → XP_015636331.1  eIF-2-alpha kinase GCN2 isoform X2

      UniProtKB/TrEMBL
      Q01IA3, Q7XSB8
      Conserved Domains (6) summary
      smart00220
      Location:437 → 739
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      PRK12420
      Location:807 → 1229
      PRK12420; histidyl-tRNA synthetase; Provisional
      cd14046
      Location:431 → 741
      STKc_EIF2AK4_GCN2_rpt2; Catalytic domain, repeat 2, of the Serine/Threonine kinase, eukaryotic translation Initiation Factor 2-Alpha Kinase 4 or General Control Non-derepressible-2
      pfam05773
      Location:30 → 143
      RWD; RWD domain
      cl00266
      Location:1141 → 1233
      HGTP_anticodon; HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for ...
      cl00268
      Location:825 → 1123
      class_II_aaRS-like_core; Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches ...

    2. XM_015780844.1 → XP_015636330.1  eIF-2-alpha kinase GCN2 isoform X1

      UniProtKB/TrEMBL
      Q01IA3
      Conserved Domains (6) summary
      smart00220
      Location:438 → 740
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      PRK12420
      Location:808 → 1230
      PRK12420; histidyl-tRNA synthetase; Provisional
      cd14046
      Location:432 → 742
      STKc_EIF2AK4_GCN2_rpt2; Catalytic domain, repeat 2, of the Serine/Threonine kinase, eukaryotic translation Initiation Factor 2-Alpha Kinase 4 or General Control Non-derepressible-2
      pfam05773
      Location:44 → 144
      RWD; RWD domain
      cl00266
      Location:1142 → 1234
      HGTP_anticodon; HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for ...
      cl00268
      Location:826 → 1124
      class_II_aaRS-like_core; Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches ...

    3. XM_015780847.1 → XP_015636333.1  eIF-2-alpha kinase GCN2 isoform X4

      UniProtKB/TrEMBL
      Q01IA3
      Conserved Domains (6) summary
      smart00220
      Location:438 → 713
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      PRK12420
      Location:781 → 1203
      PRK12420; histidyl-tRNA synthetase; Provisional
      cd14046
      Location:432 → 715
      STKc_EIF2AK4_GCN2_rpt2; Catalytic domain, repeat 2, of the Serine/Threonine kinase, eukaryotic translation Initiation Factor 2-Alpha Kinase 4 or General Control Non-derepressible-2
      pfam05773
      Location:44 → 144
      RWD; RWD domain
      cl00266
      Location:1115 → 1207
      HGTP_anticodon; HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for ...
      cl00268
      Location:799 → 1097
      class_II_aaRS-like_core; Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches ...

    4. XM_015780846.1 → XP_015636332.1  eIF-2-alpha kinase GCN2 isoform X3

      UniProtKB/TrEMBL
      Q01IA3
      Conserved Domains (6) summary
      smart00220
      Location:420 → 722
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      PRK12420
      Location:790 → 1212
      PRK12420; histidyl-tRNA synthetase; Provisional
      cd14046
      Location:414 → 724
      STKc_EIF2AK4_GCN2_rpt2; Catalytic domain, repeat 2, of the Serine/Threonine kinase, eukaryotic translation Initiation Factor 2-Alpha Kinase 4 or General Control Non-derepressible-2
      pfam05773
      Location:26 → 126
      RWD; RWD domain
      cl00266
      Location:1124 → 1216
      HGTP_anticodon; HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for ...
      cl00268
      Location:808 → 1106
      class_II_aaRS-like_core; Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches ...
    Nucleotide Protein
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