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    LOC4329910 transcription factor bHLH128 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329910, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329910
    Gene description
    transcription factor bHLH128
    Locus tag
    OSNPB_020603600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1669_F01.28
    Expression
    Biased expression in roots before flowering (RPKM 21.9), leaves after flowering (RPKM 3.5) and 2 other tissues See more
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    Genomic context

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    See LOC4329910 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24125614..24134053)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23643070..23651883)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase T3 Neighboring gene uncharacterized LOC112937913 Neighboring gene acetylajmalan esterase-like Neighboring gene 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic-like Neighboring gene GDSL esterase/lipase At5g03980

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor bHLH128
    Names
    Os02g0603600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      24125614..24134053
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770239.3 → XP_015625725.1  transcription factor bHLH128 isoform X1

      Conserved Domains (1) summary
      cd11393
      Location:235 → 287
      bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins

    2. XM_015770241.3 → XP_015625727.1  transcription factor bHLH128 isoform X2

      Conserved Domains (1) summary
      smart00353
      Location:233 → 282
      HLH; helix loop helix domain
    Nucleotide Protein
    Heading Accession and Version

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