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    LOC4327920 70 kDa peptidyl-prolyl isomerase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327920, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4327920
    Gene description
    70 kDa peptidyl-prolyl isomerase
    Locus tag
    OSNPB_010562400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0468H06.6
    Expression
    Broad expression in flower buds (RPKM 1.8), flowers (RPKM 1.5) and 5 other tissues See more
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    Genomic context

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    See LOC4327920 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (21951094..21959955)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (21380803..21389700)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene 70 kDa peptidyl-prolyl isomerase-like Neighboring gene putative UPF0481 protein At3g02645 Neighboring gene UPF0481 protein At3g47200 Neighboring gene 70 kDa peptidyl-prolyl isomerase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chaperone-mediated protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein peptidyl-prolyl isomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    70 kDa peptidyl-prolyl isomerase
    Names
    Os01g0562400
    P0496H05.31
    peptidylprolyl isomerase ROF1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      21951094..21959955
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777524.3 → XP_015633010.1  70 kDa peptidyl-prolyl isomerase isoform X1

      UniProtKB/TrEMBL
      A2ZUF7
      Conserved Domains (1) summary
      pfam00254
      Location:83 → 169
      FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase

    2. XM_015777552.3 → XP_015633038.1  70 kDa peptidyl-prolyl isomerase isoform X2

      UniProtKB/TrEMBL
      A0A0P0V450, A0A5S6R6V3, Q0JLW2, Q5JMN5, Q657M4
      Conserved Domains (2) summary
      pfam00254
      Location:204 → 285
      FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase
      cl19519
      Location:1 → 53
      FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase

    3. XM_066308890.1 → XP_066164987.1  70 kDa peptidyl-prolyl isomerase isoform X3

      UniProtKB/TrEMBL
      A0A0P0V450
    Nucleotide Protein
    Heading Accession and Version

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