LOC4332487 metallothionein-like protein 1B [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4332487
Gene description: metallothionein-like protein 1B
Locus tag: OSNPB_030288000
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: MT1B; OsJ_10428; OsMT-I-1b
Expression: Restricted expression toward roots before flowering (RPKM 862.6) See more
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Genomic context

Location:: chromosome: 3

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	3	NC_089037.1 (10007877..10009077)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	3	NC_029258.1 (9957180..9958309)

Chromosome 3 - NC_089037.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

This study evaluated the independence of N-terminal Cys-rich region of a type 1 MT isoform from rice (OsMTI- 1b) in forming metal-thiolate cluster. N-Terminal Cys-Rich Region of OsMTI- 1b independently forms metal-thiolate cluster.
Title: N-Terminal Cys-Rich Region of a Rice Type 1 Metallothionein Independently Forms Metal-Thiolate Cluster.
OsMTI-1b (AK059587) isoform has ability to bind Ni(2+), Cd(2+) and Zn(2+) ions.
Title: Heterologous expression and metal-binding characterization of a type 1 metallothionein isoform (OsMTI-1b) from rice (Oryza sativa).

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: metallothionein-like protein 1B

Names: Class I metallothionein-like protein 1B; LOC_Os03g17870

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001417563.1 → NP_001404492.1 metallothionein-like protein 1B

Status: VALIDATED

Source sequence(s)

AK103162, CI208808

UniProtKB/Swiss-Prot

A3AGU4, Q10N03

UniProtKB/TrEMBL

A2XFE5