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    LOC4345298 uncharacterized LOC4345298 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345298, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4345298
    Gene description
    uncharacterized LOC4345298
    Locus tag
    OSNPB_080332700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1224_G08.19-1; OJ1224_G08.19-2
    Expression
    Broad expression in leaves before flowering (RPKM 27.1), roots after flowering (RPKM 12.1) and 6 other tissues See more
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    Genomic context

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    See LOC4345298 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (14801217..14808418, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (14724879..14732126, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat protein 13-like Neighboring gene disease resistance protein RFL1-like Neighboring gene putative disease resistance protein RGA1 Neighboring gene mediator of RNA polymerase II transcription subunit 14 Neighboring gene uncharacterized LOC4345301

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4345298
    Names
    OSJNBa0030G18.2-1
    OSJNBa0030G18.2-2
    Os08g0332700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      14801217..14808418 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795630.2 → XP_015651116.1  uncharacterized protein LOC4345298 isoform X2

      UniProtKB/TrEMBL
      B8B9T3, Q0J6D2, Q6YTR3
      Conserved Domains (1) summary
      sd00004
      Location:109 → 134
      PPR; PPR repeat [structural motif]

    2. XM_015795628.3 → XP_015651114.1  uncharacterized protein LOC4345298 isoform X1

      UniProtKB/TrEMBL
      B8B9T3
      Conserved Domains (1) summary
      sd00004
      Location:109 → 134
      PPR; PPR repeat [structural motif]

    RNA

    1. XR_001548515.3 RNA Sequence

    2. XR_001548514.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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