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    LOC4330649 glutamine synthetase cytosolic isozyme 1-1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330649, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4330649
    Gene description
    glutamine synthetase cytosolic isozyme 1-1-like
    Locus tag
    OSNPB_020735200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RGS28; GLN1-1; OsGS1;1; OsGLN1;1; OsJ_08295; P0487D09.8
    Expression
    Ubiquitous expression in roots before flowering (RPKM 326.5), flowers (RPKM 254.0) and 6 other tissues See more
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    Genomic context

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    See LOC4330649 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (31169648..31173528, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30674779..30678654, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280146 Neighboring gene mitochondrial metalloendopeptidase OMA1 Neighboring gene ankyrin repeat-containing protein At2g01680 Neighboring gene pentatricopeptide repeat-containing protein At4g04370

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Three cDNA sequences coding for glutamine synthetase polypeptides in Oryza sativa L. Sakamoto A, et al. Plant Mol Biol, 1989 Nov. PMID 2577497
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glutamine synthetase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glutamine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glutamine synthetase cytosolic isozyme 1-1
    Names
    LOC_Os02g50240
    cytosolic glutamine synthetase 1;1
    cytosolic glutamine synthethase 1;1
    glutamate--ammonia ligase GLN1;1
    glutamine synthetase shoot isozyme
    NP_001388898.1
    XP_066163150.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401969.1 → NP_001388898.1  glutamine synthetase cytosolic isozyme 1-1

      Status: VALIDATED

      Source sequence(s)
      AK071969, X14245
      UniProtKB/Swiss-Prot
      P14656, Q0DXS9, Q6Z753
      UniProtKB/TrEMBL
      B8AI28

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      31169648..31173528 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307053.1 → XP_066163150.1  glutamine synthetase cytosolic isozyme 1-1 isoform X1

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P14656.1 GenPept UniProtKB/Swiss-Prot:P14656

    Gene LinkOut

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