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    LOC4349607 chalcone isomerase-like protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349607, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4349607
    Gene description
    chalcone isomerase-like protein 2
    Locus tag
    OSNPB_110116300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 165.6), flowers (RPKM 90.4) and 4 other tissues See more
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    Genomic context

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    See LOC4349607 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (771672..774982, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (729339..732847, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene non-specific lipid-transfer protein 1 Neighboring gene RING-H2 finger protein ATL74-like Neighboring gene uncharacterized LOC4349608 Neighboring gene protein TOC75, chloroplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables intramolecular lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chalcone isomerase-like protein 2
    Names
    Os11g0116300
    probable chalcone--flavonone isomerase 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      771672..774982 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015760958.3 → XP_015616444.1  chalcone isomerase-like protein 2 isoform X2

      UniProtKB/TrEMBL
      B9G921, Q0IV33, Q2RBC7
      Conserved Domains (1) summary
      PLN02804
      Location:8 → 210
      PLN02804; chalcone isomerase

    2. XM_066305460.1 → XP_066161557.1  chalcone isomerase-like protein 2 isoform X1

      UniProtKB/TrEMBL
      B8BIQ9
    Nucleotide Protein
    Heading Accession and Version

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