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    LOC4344254 probable E3 ubiquitin-protein ligase BAH1-like 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344254, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4344254
    Gene description
    probable E3 ubiquitin-protein ligase BAH1-like 2
    Locus tag
    OSNPB_070673200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_25542
    Expression
    Ubiquitous expression in mature seeds (RPKM 8.7), milk grains (RPKM 7.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (28680542..28684386, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (28452722..28456589, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4344252 Neighboring gene ribosome biogenesis protein NSA2 homolog Neighboring gene uncharacterized LOC107281507 Neighboring gene uncharacterized LOC107281655

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    probable E3 ubiquitin-protein ligase BAH1-like 2
    Names
    LOC_Os07g47590
    P0470D12.139
    RING-type E3 ubiquitin transferase BAH1-like 2
    NP_001409213.1
    NP_001409214.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422284.1 → NP_001409213.1  probable E3 ubiquitin-protein ligase BAH1-like 2

      Status: VALIDATED

      Source sequence(s)
      CB649030, CB651784, CB651785, CI430521, CI658180
      UniProtKB/Swiss-Prot
      A0A0P0XAC2, B9FUU4, Q7XI73

    2. NM_001422285.1 → NP_001409214.1  probable E3 ubiquitin-protein ligase BAH1-like 2

      Status: VALIDATED

      Source sequence(s)
      CB649030, CB651785, CI430521, CI658180
      UniProtKB/Swiss-Prot
      A0A0P0XAC2, B9FUU4, Q7XI73

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      28680542..28684386 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XI73.1 GenPept UniProtKB/Swiss-Prot:Q7XI73

    Gene LinkOut

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