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    LOC4345404 protein tesmin/TSO1-like CXC 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345404, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4345404
    Gene description
    protein tesmin/TSO1-like CXC 5
    Locus tag
    OSNPB_080369600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1770_H03.17; OJ1770_H03.18
    Expression
    Ubiquitous expression in mature seeds (RPKM 7.0), flower buds (RPKM 6.9) and 6 other tissues See more
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    Genomic context

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    See LOC4345404 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (17343256..17350125, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (17214129..17221235, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266842 Neighboring gene small nucleolar RNA J26 Neighboring gene iron-sulfur assembly protein IscA-like 2, mitochondrial Neighboring gene carotenoid 9,10(9',10')-cleavage dioxygenase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein tesmin/TSO1-like CXC 5; protein tesmin/TSO1-like CXC 7
    Names
    OSJNBa0091C18.39
    OSJNBa0091C18.40
    Os08g0369600
    transcription factor-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      17343256..17350125 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066303517.1 → XP_066159614.1  protein tesmin/TSO1-like CXC 7 isoform X1

      UniProtKB/TrEMBL
      B8BA95

    2. XM_066303518.1 → XP_066159615.1  protein tesmin/TSO1-like CXC 7 isoform X1

      UniProtKB/TrEMBL
      B8BA95

    3. XM_015795078.3 → XP_015650564.1  protein tesmin/TSO1-like CXC 7 isoform X1

      UniProtKB/TrEMBL
      B8BA95
      Conserved Domains (1) summary
      pfam03638
      Location:254 → 291
      TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

    4. XM_066303519.1 → XP_066159616.1  protein tesmin/TSO1-like CXC 5 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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