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    LOC4334114 uncharacterized LOC4334114 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334114, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4334114
    Gene description
    uncharacterized LOC4334114
    Locus tag
    OSNPB_030749300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 179.7), flower buds (RPKM 128.1) and 4 other tissues See more
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    Genomic context

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    See LOC4334114 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (31734492..31740208)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (30851630..30857324)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene putative ammonium transporter 4 member 1 Neighboring gene uncharacterized LOC4334113 Neighboring gene uncharacterized LOC9269281 Neighboring gene uncharacterized LOC4334116

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-glucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glucan catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4334114
    Names
    Os03g0749300
    beta-glucosidase BoGH3B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      31734492..31740208
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775684.3 → XP_015631170.1  uncharacterized protein LOC4334114

      UniProtKB/TrEMBL
      A0A5S6R937, A2XM08, A3AMQ2, Q10CU9, Q8W2Z8
      Conserved Domains (1) summary
      PRK15098
      Location:1 → 619
      PRK15098; beta-glucosidase BglX

    2. XM_026023847.2 → XP_025879632.1  uncharacterized protein LOC4334114

      UniProtKB/TrEMBL
      A0A5S6R937, A2XM08, A3AMQ2, Q10CU9, Q8W2Z8
      Conserved Domains (1) summary
      PRK15098
      Location:1 → 619
      PRK15098; beta-glucosidase BglX
    Nucleotide Protein
    Heading Accession and Version

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