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    LOC9272566 cyclic dof factor 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9272566, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9272566
    Gene description
    cyclic dof factor 2
    Locus tag
    OSNPB_010264000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC9272566 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (8962146..8965589, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (8949252..8952707, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit 27 Neighboring gene protein STABILIZED1-like Neighboring gene uncharacterized LOC136354963 Neighboring gene UTP--glucose-1-phosphate uridylyltransferase Neighboring gene small nucleolar RNA Z247

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclic dof factor 2
    Names
    Os01g0264000
    P0453A06.11
    putative ascorbate oxidase promoter-binding protein AOBP

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      8962146..8965589 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762779.3 → XP_015618265.1  cyclic dof factor 2

      UniProtKB/TrEMBL
      B8AC63, B9EV34
      Conserved Domains (2) summary
      PTZ00121
      Location:49 → 167
      PTZ00121; MAEBL; Provisional
      pfam02701
      Location:167 → 223
      zf-Dof; Dof domain, zinc finger
    Nucleotide Protein
    Heading Accession and Version

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