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    LOC4344398 protein RETARDED ROOT GROWTH, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344398, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4344398
    Gene description
    protein RETARDED ROOT GROWTH, mitochondrial
    Locus tag
    OSNPB_070694800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 19.0), leaves after flowering (RPKM 17.1) and 6 other tissues See more
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    Genomic context

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    See LOC4344398 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29824248..29828166, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29589393..29593824, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene arogenate dehydratase/prephenate dehydratase 2, chloroplastic Neighboring gene L-ascorbate peroxidase 2, cytosolic-like Neighboring gene uncharacterized LOC136357469 Neighboring gene two-component response regulator-like PRR37

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein RETARDED ROOT GROWTH, mitochondrial
    Names
    Os07g0694800
    P0627E10.15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      29824248..29828166 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791066.3 → XP_015646552.1  protein RETARDED ROOT GROWTH, mitochondrial

      UniProtKB/TrEMBL
      A0A0N7KP43, A3BNR3, Q6Z3Y1
      Conserved Domains (1) summary
      pfam02582
      Location:174 → 345
      DUF155; Uncharacterized ACR, YagE family COG1723
    Nucleotide Protein
    Heading Accession and Version

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