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    LOC4337069 chloroplastic lipocalin [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337069, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4337069
    Gene description
    chloroplastic lipocalin
    Locus tag
    OSNPB_040626400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 49.5), roots after flowering (RPKM 25.4) and 4 other tissues See more
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    Genomic context

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    See LOC4337069 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31848490..31850937, complement)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4337067 Neighboring gene small nucleolar RNA snoR97 Neighboring gene uncharacterized LOC112938577 Neighboring gene uncharacterized LOC112938578 Neighboring gene disease resistance protein RGA2 Neighboring gene uncharacterized LOC4337070 Neighboring gene uncharacterized LOC107280769

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables small molecule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chloroplastic lipocalin
    Names
    Os04g0626400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      31848490..31850937 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780451.2 → XP_015635937.1  chloroplastic lipocalin

      UniProtKB/TrEMBL
      A0A0P0WFC5, A0A8J8Y292, B8AUT0, B9FCM4, Q01K86
      Conserved Domains (1) summary
      cl10502
      Location:114 → 254
      lipocalin_FABP; lipocalin/cytosolic fatty acid-binding protein family
    Nucleotide Protein
    Heading Accession and Version

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