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    LOC4330230 scarecrow-like protein 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330230, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330230
    Gene description
    scarecrow-like protein 6
    Locus tag
    OSNPB_020662700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1001_D02.11-1; OJ1001_D02.11-2
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    Genomic context

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    See LOC4330230 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (27327980..27330750)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (26841539..26844319)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330228 Neighboring gene uncharacterized LOC112937838 Neighboring gene scarecrow-like protein 6 Neighboring gene uncharacterized LOC136355349

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    scarecrow-like protein 6
    Names
    Os02g0662700
    P0516F12.29-1
    P0516F12.29-2
    Scl1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      27327980..27330750
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771929.3 → XP_015627415.1  scarecrow-like protein 6

      UniProtKB/TrEMBL
      A2X816, Q6EUJ0, Q6H6L3
      Conserved Domains (2) summary
      pfam03514
      Location:368 → 708
      GRAS; GRAS domain family
      pfam15685
      Location:227 → 346
      GGN; Gametogenetin
    Nucleotide Protein
    Heading Accession and Version

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