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    LOC4338095 uncharacterized LOC4338095 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338095, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4338095
    Gene description
    uncharacterized LOC4338095
    Locus tag
    OSNPB_050210500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4338095 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (6866410..6876413, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (6843388..6853105, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At1g28580 Neighboring gene GDSL esterase/lipase At5g45910 Neighboring gene TPR repeat-containing thioredoxin TTL1 Neighboring gene uncharacterized LOC9271398

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA replication checkpoint signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in replication fork arrest IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of replication fork protection complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4338095
    Names
    Os05g0210500
    protein timeless homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      6866410..6876413 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311110.1 → XP_066167207.1  uncharacterized protein LOC4338095 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WJ92

    2. XM_015781955.3 → XP_015637441.1  uncharacterized protein LOC4338095 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WJ92
      Conserved Domains (1) summary
      pfam04821
      Location:27 → 282
      TIMELESS; Timeless protein
    Nucleotide Protein
    Heading Accession and Version

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