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    LOC4330709 soluble starch synthase 2-2, chloroplastic/amyloplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330709, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4330709
    Gene description
    soluble starch synthase 2-2, chloroplastic/amyloplastic-like
    Locus tag
    OSNPB_020744700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SS2; SSII-2; OJ1118_G04.8; OJ1734_E02.35
    Expression
    Broad expression in leaves before flowering (RPKM 26.2), roots after flowering (RPKM 17.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (31728372..31733378, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (31233268..31238222, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280066 Neighboring gene probable glucomannan 4-beta-mannosyltransferase 6 Neighboring gene geranylgeranyl diphosphate reductase, chloroplastic-like Neighboring gene protein RKD1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycogen (starch) synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    soluble starch synthase 2-2, chloroplastic/amyloplastic
    Names
    LOC_Os02g51070
    putative soluble starch synthase 2
    soluble starch synthase II-2
    starch synthase
    NP_001403821.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416892.1 → NP_001403821.1  soluble starch synthase 2-2, chloroplastic/amyloplastic

      Status: VALIDATED

      Source sequence(s)
      AK061803, AK066446, CI105572, CI129769, CI387765, CI569815, CI686240
      UniProtKB/Swiss-Prot
      Q6Z2T8, Q949A6, Q94ET4
      UniProtKB/TrEMBL
      B8AIG0, D0TZP8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      31728372..31733378 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6Z2T8.2 GenPept UniProtKB/Swiss-Prot:Q6Z2T8

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