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    LOC4330096 ferredoxin-thioredoxin reductase, variable chain [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330096, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330096
    Gene description
    ferredoxin-thioredoxin reductase, variable chain
    Locus tag
    OSNPB_020638300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0010C01.4
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    Genomic context

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    See LOC4330096 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (26076270..26077122, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (25589926..25590834, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene uncharacterized protein At1g65710 Neighboring gene vacuolar-sorting protein BRO1 Neighboring gene ethylene-responsive transcription factor ERF054

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in photosynthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ferredoxin-thioredoxin reductase, variable chain
    Names
    OSJNBa0014E22.28
    Os02g0638300
    putative ferredoxin-thioredoxin reductase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      26076270..26077122 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767986.3 → XP_015623472.1  ferredoxin-thioredoxin reductase, variable chain

      UniProtKB/TrEMBL
      A2X7M2, A3A9E7, Q0DZ91, Q6H5V4
      Conserved Domains (1) summary
      pfam02941
      Location:70 → 143
      FeThRed_A; Ferredoxin thioredoxin reductase variable alpha chain
    Nucleotide Protein
    Heading Accession and Version

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