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    LOC4339106 expansin-A4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339106, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4339106
    Gene description
    expansin-A4-like
    Locus tag
    OSNPB_050477600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    EXP4; EXPA4; OsEXP4; OsEXPA4; OsJ_18926; OsJ_018161
    Expression
    Biased expression in flower buds (RPKM 48.4), flowers (RPKM 42.9) and 2 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (23609967..23611933, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (23495628..23497585, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein eS26-like Neighboring gene small nucleolar RNA snoR99 Neighboring gene uncharacterized LOC4339105 Neighboring gene uncharacterized LOC4339107 Neighboring gene non-specific lipid-transfer protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in plant-type cell wall organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    expansin-A4
    Names
    Alpha-expansin-4
    LOC_Os05g39990
    OSJNBa0018K15.5
    OsaEXPa1.22

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420547.1 → NP_001407476.1  expansin-A4 precursor

      Status: VALIDATED

      Source sequence(s)
      CI094590, CI163809, CI244929, CI564795
      UniProtKB/Swiss-Prot
      A2Y5R6, B7EQ33, P93442, Q0DHB7, Q75GN4, Q946J0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      23609967..23611933 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0DHB7.1 GenPept UniProtKB/Swiss-Prot:Q0DHB7

    Gene LinkOut

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