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    LOC4324888 MADS-box transcription factor 21-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324888, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4324888
    Gene description
    MADS-box transcription factor 21-like
    Locus tag
    OSNPB_010886200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MADS21; OsMADS21; RMADS207; OsJ_04337; P0434C04.5
    Expression
    Biased expression in flower buds (RPKM 44.2), milk grains (RPKM 28.0) and 1 other tissue See more
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    Genomic context

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    See LOC4324888 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (39131194..39135442)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38500881..38505098)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324886 Neighboring gene transfer RNA isoleucine (anticodon UAU) Neighboring gene KH domain-containing protein At1g09660/At1g09670 Neighboring gene uncharacterized LOC136354799

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Systematic reverse genetic screening of T-DNA tagged genes in rice for functional genomic analyses: MADS-box genes as a test case. Lee S, et al. Plant Cell Physiol, 2003 Dec. PMID 14701936
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mADS-box transcription factor 21
    Names
    LOC_Os01g66290
    MADS-box protein RMADS207
    MADS-box transcription factor 21
    P0408G07.26
    transcription factor MADS21

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001405446.1 → NP_001392375.1  mADS-box transcription factor 21

      Status: VALIDATED

      Source sequence(s)
      AK070958, CI173456
      UniProtKB/Swiss-Prot
      A3A0B6, Q84NC7, Q8RU31
      UniProtKB/TrEMBL
      A2WXQ4, D3U2H6, Q0JH36

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      39131194..39135442
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RU31.1 GenPept UniProtKB/Swiss-Prot:Q8RU31

    Gene LinkOut

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    Research Materials