U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4326847 uncharacterized LOC4326847 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326847, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4326847
    Gene description
    uncharacterized LOC4326847
    Locus tag
    OSNPB_010337600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 27.2), leaves before flowering (RPKM 24.9) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4326847 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (13290033..13305827, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (13246392..13262255, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase-like 4 Neighboring gene pyrophosphate-energized vacuolar membrane proton pump Neighboring gene uncharacterized LOC4326848 Neighboring gene dihydrolipoyl dehydrogenase 1, chloroplastic

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein phosphatase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of protein phosphatase 4 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC4326847
    Names
    Os01g0337600
    P0487E11.32-1
    P0487E11.32-2
    serine/threonine-protein phosphatase 4 regulatory subunit 3B

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      13290033..13305827 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026025233.2 → XP_025881018.1  uncharacterized protein LOC4326847 isoform X3

      UniProtKB/TrEMBL
      Q0JN25, Q5Z8F2
      Conserved Domains (1) summary
      pfam04802
      Location:176 → 363
      SMK-1; Component of IIS longevity pathway SMK-1

    2. XM_015758270.3 → XP_015613756.1  uncharacterized protein LOC4326847 isoform X2

      UniProtKB/TrEMBL
      Q0JN25, Q5Z8F2
      Conserved Domains (1) summary
      pfam04802
      Location:181 → 368
      SMK-1; Component of IIS longevity pathway SMK-1

    3. XM_015758265.3 → XP_015613751.1  uncharacterized protein LOC4326847 isoform X1

      UniProtKB/TrEMBL
      Q0JN25, Q5Z8F2
      Conserved Domains (1) summary
      pfam04802
      Location:203 → 390
      SMK-1; Component of IIS longevity pathway SMK-1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials