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    LOC4334649 DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334649, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4334649
    Gene description
    DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like
    Locus tag
    OSNPB_030827700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 241.7), roots after flowering (RPKM 88.8) and 3 other tissues See more
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    Genomic context

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    See LOC4334649 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (35738638..35744980)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (34765944..34772318)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene SPX domain-containing protein 4-like Neighboring gene transmembrane protein 184A Neighboring gene uncharacterized LOC107278579 Neighboring gene NAC domain-containing protein 72-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DEAD-box ATP-dependent RNA helicase 3, chloroplastic
    Names
    LOC_Os03g61220
    OSJNBa0010E04.4
    NP_001405903.1
    NP_001405904.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001418974.1 → NP_001405903.1  DEAD-box ATP-dependent RNA helicase 3, chloroplastic isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK065849, AP014959, AU056130, CB649550
      UniProtKB/Swiss-Prot
      A0A0N7KIB7, B7EBF8, Q0DM51, Q10B75, Q10B76, Q8SAX7

    2. NM_001418975.1 → NP_001405904.1  DEAD-box ATP-dependent RNA helicase 3, chloroplastic isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK065849, AP014959, AU056130, CB649550, CF326597

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      35738638..35744980
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0DM51.2 GenPept UniProtKB/Swiss-Prot:Q0DM51

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials