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    LOC4331733 putative vesicle-associated membrane protein 726 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331733, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331733
    Gene description
    putative vesicle-associated membrane protein 726
    Locus tag
    OSNPB_030165800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 44.7) and flowers (RPKM 28.0) See more
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    Genomic context

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    See LOC4331733 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (3561493..3564150)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (3551768..3554415)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene beta-galactosidase 5-like Neighboring gene uncharacterized LOC4331732 Neighboring gene protein SULFUR DEFICIENCY-INDUCED 2 Neighboring gene uncharacterized LOC4331735

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative vesicle-associated membrane protein 726
    Names
    Os03g0165800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      3561493..3564150
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774516.3 → XP_015630002.1  putative vesicle-associated membrane protein 726

      UniProtKB/TrEMBL
      A2XCW9, A3AEG9, Q0DUV4, Q10RB1
      Conserved Domains (2) summary
      cd14824
      Location:10 → 124
      Longin; longin domain
      pfam00957
      Location:130 → 217
      Synaptobrevin
    Nucleotide Protein
    Heading Accession and Version

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