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    LOC4329862 rhodanese-like domain-containing protein 11, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329862, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329862
    Gene description
    rhodanese-like domain-containing protein 11, chloroplastic
    Locus tag
    OSNPB_020596000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1568_B05.1; OJ1126_D09.34
    Expression
    Broad expression in leaves before flowering (RPKM 38.9), roots after flowering (RPKM 18.5) and 4 other tissues See more
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    Genomic context

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    See LOC4329862 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (23609433..23612485, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23126922..23129914, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4B1 Neighboring gene high-affinity nitrate transporter-activating protein 2.1 Neighboring gene mRNA export factor GLE1 Neighboring gene glycosyl hydrolase 5 family protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    rhodanese-like domain-containing protein 11, chloroplastic
    Names
    Os02g0596000
    rhodanese-like domain-containing protein -like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      23609433..23612485 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768364.2 → XP_015623850.1  rhodanese-like domain-containing protein 11, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0VL67, B8AER2, Q6K919, Q6ZI49
      Conserved Domains (1) summary
      cd00158
      Location:106 → 214
      RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
    Nucleotide Protein
    Heading Accession and Version

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