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    LOC4329900 protein phosphatase inhibitor 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329900, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4329900
    Gene description
    protein phosphatase inhibitor 2
    Locus tag
    OSNPB_020602300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1669_F01.10; OJ1669_F01.11; OJ1791_B03.48; OJ1791_B03.49
    Expression
    Ubiquitous expression in flowers (RPKM 15.0), leaves after flowering (RPKM 14.3) and 6 other tissues See more
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    Genomic context

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    See LOC4329900 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24055477..24058026)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23572951..23578283)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase G-1-like Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 1-like Neighboring gene transcription termination factor MTERF5, chloroplastic-like Neighboring gene uncharacterized LOC4329902

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein phosphatase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of phosphoprotein phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein phosphatase inhibitor 2
    Names
    Os02g0602300
    Os02g0602400
    mitochondrial transcription termination factor-like protein
    transcription termination factor MTERF5, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      24055477..24058026
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307419.1 → XP_066163516.1  protein phosphatase inhibitor 2

    2. XM_015770452.3 → XP_015625938.1  protein phosphatase inhibitor 2

      UniProtKB/TrEMBL
      A0A0P0VL97, A2X6X2, Q6K5F6
      Conserved Domains (1) summary
      pfam04979
      Location:17 → 177
      IPP-2; Protein phosphatase inhibitor 2 (IPP-2)
    Nucleotide Protein
    Heading Accession and Version

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