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    LOC4343306 protein trichome birefringence-like 13 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343306, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343306
    Gene description
    protein trichome birefringence-like 13
    Locus tag
    OSNPB_070498900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 4.6), flowers (RPKM 4.5) and 6 other tissues See more
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    Genomic context

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    See LOC4343306 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (18953558..18959130)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (18727950..18733560)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene LRR receptor-like serine/threonine-protein kinase GSO1 Neighboring gene ubiquitin-like domain-containing protein CIP73 Neighboring gene uncharacterized LOC107281625 Neighboring gene uncharacterized LOC136357436

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein trichome birefringence-like 13
    Names
    OSJNBb0055I24.101
    Os07g0498900
    leaf senescence related protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      18953558..18959130
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789804.3 → XP_015645290.1  protein trichome birefringence-like 13 isoform X1

      UniProtKB/TrEMBL
      A2YLK2, A3BK16, Q0D697, Q69RQ8
      Conserved Domains (2) summary
      pfam13839
      Location:119 → 406
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:60 → 118
      PMR5N; PMR5 N terminal Domain

    2. XM_015789806.3 → XP_015645292.1  protein trichome birefringence-like 13 isoform X2

      UniProtKB/TrEMBL
      A2YLK2
      Conserved Domains (2) summary
      pfam13839
      Location:119 → 331
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:60 → 118
      PMR5N; PMR5 N terminal Domain
    Nucleotide Protein
    Heading Accession and Version

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