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    LOC4349840 uncharacterized LOC4349840 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349840, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349840
    Gene description
    uncharacterized LOC4349840
    Locus tag
    OSNPB_110159000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349840 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (2907534..2915655, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (2860823..2869000, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene transcription factor LHW Neighboring gene BEL1-like homeodomain protein 1 Neighboring gene uncharacterized LOC107279468 Neighboring gene transfer RNA proline (anticodon AGG)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4349840
    Names
    Os11g0159000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      2907534..2915655 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761978.3 → XP_015617464.1  uncharacterized protein LOC4349840

      UniProtKB/TrEMBL
      A0A8J8YAJ1, B9G9I2, Q2RAA5
      Conserved Domains (3) summary
      cd06872
      Location:558 → 663
      PX_SNX19_like_plant; The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins
      pfam02194
      Location:106 → 284
      PXA; PXA domain
      pfam08628
      Location:852 → 994
      Nexin_C; Sorting nexin C terminal
    Nucleotide Protein
    Heading Accession and Version

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