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    LOC4342011 protein DETOXIFICATION 16 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342011, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4342011
    Gene description
    protein DETOXIFICATION 16
    Locus tag
    OSNPB_060707100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 6.9), roots after flowering (RPKM 6.0) and 6 other tissues See more
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    Genomic context

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    See LOC4342011 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (30745767..30753573)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (29877086..29884603)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9270712 Neighboring gene beta-1,2-xylosyltransferase XYXT1-like Neighboring gene alpha-1,3-arabinosyltransferase XAT2-like Neighboring gene uncharacterized LOC4342013 Neighboring gene putative disease resistance protein At3g14460 Neighboring gene uncharacterized LOC107281441 Neighboring gene putative disease resistance protein RGA3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables xenobiotic transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in xenobiotic detoxification by transmembrane export across the plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein DETOXIFICATION 16
    Names
    Os06g0707100

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      30745767..30753573
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026026083.2 → XP_025881868.1  protein DETOXIFICATION 16 isoform X1

      UniProtKB/TrEMBL
      A0A5S6R9H5, A2YGU1, A3BF88, Q0D9N5
      Conserved Domains (1) summary
      cd13132
      Location:30 → 468
      MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

    2. XM_026026084.2 → XP_025881869.1  protein DETOXIFICATION 16 isoform X1

      UniProtKB/TrEMBL
      A0A5S6R9H5, A2YGU1, A3BF88, Q0D9N5
      Conserved Domains (1) summary
      cd13132
      Location:30 → 468
      MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

    3. XM_026026086.2 → XP_025881871.1  protein DETOXIFICATION 16 isoform X1

      UniProtKB/TrEMBL
      A0A5S6R9H5, A2YGU1, A3BF88, Q0D9N5
      Conserved Domains (1) summary
      cd13132
      Location:30 → 468
      MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

    4. XM_026026087.2 → XP_025881872.1  protein DETOXIFICATION 16 isoform X1

      UniProtKB/TrEMBL
      A0A5S6R9H5, A2YGU1, A3BF88, Q0D9N5
      Conserved Domains (1) summary
      cd13132
      Location:30 → 468
      MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

    5. XM_026026085.2 → XP_025881870.1  protein DETOXIFICATION 16 isoform X1

      UniProtKB/TrEMBL
      A0A5S6R9H5, A2YGU1, A3BF88, Q0D9N5
      Conserved Domains (1) summary
      cd13132
      Location:30 → 468
      MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

    6. XM_026026088.2 → XP_025881873.1  protein DETOXIFICATION 16 isoform X1

      UniProtKB/TrEMBL
      A0A5S6R9H5, A2YGU1, A3BF88, Q0D9N5
      Conserved Domains (1) summary
      cd13132
      Location:30 → 468
      MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

    7. XM_026026089.2 → XP_025881874.1  protein DETOXIFICATION 16 isoform X1

      UniProtKB/TrEMBL
      A0A5S6R9H5, A2YGU1, A3BF88, Q0D9N5
      Conserved Domains (1) summary
      cd13132
      Location:30 → 468
      MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

    8. XM_066311405.1 → XP_066167502.1  protein DETOXIFICATION 16 isoform X1

      UniProtKB/TrEMBL
      A0A5S6R9H5, A2YGU1, A3BF88, Q0D9N5

    9. XM_066311408.1 → XP_066167505.1  protein DETOXIFICATION 16 isoform X2

      UniProtKB/TrEMBL
      A2YGU1

    10. XM_066311410.1 → XP_066167507.1  protein DETOXIFICATION 16 isoform X2

      UniProtKB/TrEMBL
      A2YGU1

    11. XM_066311411.1 → XP_066167508.1  protein DETOXIFICATION 16 isoform X2

      UniProtKB/TrEMBL
      A2YGU1

    12. XM_066311409.1 → XP_066167506.1  protein DETOXIFICATION 16 isoform X2

      UniProtKB/TrEMBL
      A2YGU1

    13. XM_066311412.1 → XP_066167509.1  protein DETOXIFICATION 16 isoform X2

      UniProtKB/TrEMBL
      A2YGU1

    14. XM_026026093.2 → XP_025881878.1  protein DETOXIFICATION 16 isoform X1

      UniProtKB/TrEMBL
      A0A5S6R9H5, A2YGU1, A3BF88, Q0D9N5
      Conserved Domains (1) summary
      cd13132
      Location:30 → 468
      MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

    15. XM_026026095.2 → XP_025881880.1  protein DETOXIFICATION 16 isoform X1

      UniProtKB/TrEMBL
      A0A5S6R9H5, A2YGU1, A3BF88, Q0D9N5
      Conserved Domains (1) summary
      cd13132
      Location:30 → 468
      MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

    16. XM_066311406.1 → XP_066167503.1  protein DETOXIFICATION 16 isoform X1

      UniProtKB/TrEMBL
      A0A5S6R9H5, A2YGU1, A3BF88, Q0D9N5

    17. XM_066311407.1 → XP_066167504.1  protein DETOXIFICATION 16 isoform X1

      UniProtKB/TrEMBL
      A0A5S6R9H5, A2YGU1, A3BF88, Q0D9N5
    Nucleotide Protein
    Heading Accession and Version

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