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    LOC4324199 peptidyl-prolyl cis-trans isomerase CYP57 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324199, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4324199
    Gene description
    peptidyl-prolyl cis-trans isomerase CYP57
    Locus tag
    OSNPB_010582400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 15.3), leaves after flowering (RPKM 13.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (23164647..23169912, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (22591075..22596172, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein RGA2 Neighboring gene uncharacterized LOC9272369 Neighboring gene protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 Neighboring gene probable protein phosphatase 2C 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein peptidyl-prolyl isomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidyl-prolyl cis-trans isomerase CYP57
    Names
    B1097D05.29
    Os01g0582400
    peptidyl prolyl cis trans isomerase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      23164647..23169912 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026026678.2 → XP_025882463.1  peptidyl-prolyl cis-trans isomerase CYP57

      UniProtKB/TrEMBL
      A2WRT5, A2ZUR6, Q0JLQ1
      Conserved Domains (2) summary
      cd01925
      Location:8 → 179
      cyclophilin_CeCYP16-like; cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase ...
      cd22288
      Location:401 → 449
      CWC27_CTD; C-terminal domain of spliceosome-associated protein CWC27 and similar proteins

    2. XM_015779902.3 → XP_015635388.1  peptidyl-prolyl cis-trans isomerase CYP57

      UniProtKB/TrEMBL
      A2WRT5, A2ZUR6, Q0JLQ1
      Conserved Domains (2) summary
      cd01925
      Location:8 → 179
      cyclophilin_CeCYP16-like; cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase ...
      cd22288
      Location:401 → 449
      CWC27_CTD; C-terminal domain of spliceosome-associated protein CWC27 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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