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    LOC9271425 hexanoyl-CoA synthase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9271425, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC9271425
    Gene description
    hexanoyl-CoA synthase
    Locus tag
    OSNPB_090380000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 82.8), roots after flowering (RPKM 82.7) and 6 other tissues See more
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    Genomic context

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    See LOC9271425 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (17174669..17179068)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (12817133..12821615)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein HOX25 Neighboring gene glucan endo-1,3-beta-D-glucosidase Neighboring gene protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic Neighboring gene cytochrome P450 716A1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    hexanoyl-CoA synthase
    Names
    Os09g0380000
    Os09g0380050
    P0027G10.30-1
    acyl-activating enzyme 17-like protein
    probable acyl-activating enzyme 17, peroxisomal

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      17174669..17179068
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756862.2 → XP_015612348.1  hexanoyl-CoA synthase isoform X2

      UniProtKB/TrEMBL
      B8BF43
      Conserved Domains (1) summary
      PLN03052
      Location:1 → 587
      PLN03052; acetate--CoA ligase; Provisional

    2. XM_015756861.3 → XP_015612347.1  hexanoyl-CoA synthase isoform X1

      UniProtKB/TrEMBL
      A3BYC3
      Conserved Domains (1) summary
      PLN03052
      Location:12 → 731
      PLN03052; acetate--CoA ligase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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