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    LOC4347481 type I inositol polyphosphate 5-phosphatase 13 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347481, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4347481
    Gene description
    type I inositol polyphosphate 5-phosphatase 13
    Locus tag
    OSNPB_090500300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4347481 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (23773948..23779515)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (19363135..19368929)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene F-box protein At5g03100-like Neighboring gene uncharacterized LOC4347480 Neighboring gene DNA topoisomerase 3-beta-like Neighboring gene cytochrome b561 and DOMON domain-containing protein At3g25290

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylinositol dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    type I inositol polyphosphate 5-phosphatase 13
    Names
    Os09g0500300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      23773948..23779515
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755744.3 → XP_015611230.1  type I inositol polyphosphate 5-phosphatase 13

      UniProtKB/TrEMBL
      B8BD51
      Conserved Domains (3) summary
      cd09074
      Location:616 → 957
      INPP5c; Catalytic domain of inositol polyphosphate 5-phosphatases
      sd00039
      Location:526 → 559
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:499 → 595
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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