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    LOC4325543 pentatricopeptide repeat-containing protein At2g27800, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325543, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4325543
    Gene description
    pentatricopeptide repeat-containing protein At2g27800, mitochondrial
    Locus tag
    OSNPB_010747600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4325543 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (31886639..31888087, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (31286680..31288096, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4325540 Neighboring gene serine/threonine/tyrosine-protein kinase HT1 Neighboring gene dihydroorotase, mitochondrial-like Neighboring gene uncharacterized LOC4325544 Neighboring gene VQ motif-containing protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At2g27800, mitochondrial
    Names
    Os01g0747600
    P0481E12.14
    pentatricopeptide (PPR) repeat-containing protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      31886639..31888087 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766034.3 → XP_015621520.1  pentatricopeptide repeat-containing protein At2g27800, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0V863, A0A9K3Y6M4, A2WV10, Q0JJD0, Q94J37
      Conserved Domains (3) summary
      sd00004
      Location:220 → 248
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:216 → 264
      PPR_2; PPR repeat family
      pfam17177
      Location:164 → 337
      PPR_long; Pentacotripeptide-repeat region of PRORP
    Nucleotide Protein
    Heading Accession and Version

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