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    LOC4344035 pentatricopeptide repeat-containing protein At1g08070, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344035, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4344035
    Gene description
    pentatricopeptide repeat-containing protein At1g08070, chloroplastic
    Locus tag
    OSNPB_070636900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4344035 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (26690927..26697493, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (26464444..26470762, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene dirigent protein 5-like Neighboring gene dirigent protein 5 Neighboring gene CBL-interacting protein kinase 21-like Neighboring gene uncharacterized LOC4344037 Neighboring gene uncharacterized LOC4344038

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At1g08070, chloroplastic
    Names
    Os07g0636900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      26690927..26697493 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790643.3 → XP_015646129.2  pentatricopeptide repeat-containing protein At1g08070, chloroplastic

      UniProtKB/TrEMBL
      A3BML6
      Conserved Domains (2) summary
      sd00004
      Location:303 → 330
      PPR; PPR repeat [structural motif]
      cl25449
      Location:63 → 607
      PPR_2; PPR repeat family

    2. XM_015790641.3 → XP_015646127.2  pentatricopeptide repeat-containing protein At1g08070, chloroplastic

      UniProtKB/TrEMBL
      A3BML6
      Conserved Domains (2) summary
      sd00004
      Location:303 → 330
      PPR; PPR repeat [structural motif]
      cl25449
      Location:63 → 607
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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