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    LOC4352748 eukaryotic translation initiation factor 2 subunit gamma [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352748, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4352748
    Gene description
    eukaryotic translation initiation factor 2 subunit gamma
    Locus tag
    OSNPB_120607100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 62.8), flowers (RPKM 42.3) and 6 other tissues See more
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    Genomic context

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    See LOC4352748 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (26362987..26367650)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (25647420..25652147)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-like-specific protease 1C Neighboring gene homocysteine S-methyltransferase 2 Neighboring gene L-type lectin-domain containing receptor kinase IX.1-like Neighboring gene uncharacterized LOC9272154

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in formation of translation preinitiation complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of eukaryotic translation initiation factor 2 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    eukaryotic translation initiation factor 2 subunit gamma
    Names
    Os12g0607100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      26362987..26367650
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764524.3 → XP_015620010.1  eukaryotic translation initiation factor 2 subunit gamma

      UniProtKB/TrEMBL
      B8BMX0, B9GE66, Q0IM13, Q2QME5
      Conserved Domains (1) summary
      PTZ00327
      Location:1 → 459
      PTZ00327; eukaryotic translation initiation factor 2 gamma subunit; Provisional
    Nucleotide Protein
    Heading Accession and Version

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