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    LOC4343865 uncharacterized LOC4343865 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343865, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4343865
    Gene description
    uncharacterized LOC4343865
    Locus tag
    OSNPB_070608100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 124.7), leaves after flowering (RPKM 75.9) and 5 other tissues See more
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    Genomic context

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    See LOC4343865 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (24993811..24996411)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene acidic leucine-rich nuclear phosphoprotein 32-related protein 1-like Neighboring gene uncharacterized LOC112939651 Neighboring gene uncharacterized LOC107278657 Neighboring gene nuclear transcription factor Y subunit A-4 Neighboring gene alpha/beta hydrolase domain-containing protein WAV2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in chloroplast envelope IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized LOC4343865; uncharacterized protein LOC4343865
    Names
    OSJNBa0072I06.33
    Os07g0608100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422265.1 → NP_001409194.1  uncharacterized LOC4343865

      Status: VALIDATED

      Source sequence(s)
      AK068225
      UniProtKB/TrEMBL
      A0A0P0X8S7, A2YNK3, A3BM17, Q6YSF0

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      24993811..24996411
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791079.2 → XP_015646565.1  uncharacterized protein LOC4343865 isoform X2

      UniProtKB/TrEMBL
      A0A0P0X8S7, A2YNK3, A3BM17, Q6YSF0

    2. XM_015791078.2 → XP_015646564.1  uncharacterized protein LOC4343865 isoform X1

      UniProtKB/TrEMBL
      Q6YSF0
    Nucleotide Protein
    Heading Accession and Version

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