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    LOC4342012 alpha-1,3-arabinosyltransferase XAT2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342012, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342012
    Gene description
    alpha-1,3-arabinosyltransferase XAT2-like
    Locus tag
    OSNPB_060707200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 23.3), flowers (RPKM 23.2) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (30753139..30754971, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (29884452..29886488, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9270712 Neighboring gene beta-1,2-xylosyltransferase XYXT1-like Neighboring gene protein DETOXIFICATION 16 Neighboring gene uncharacterized LOC4342013 Neighboring gene putative disease resistance protein At3g14460 Neighboring gene uncharacterized LOC107281441 Neighboring gene putative disease resistance protein RGA3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-1,3-arabinosyltransferase XAT2-like
    Names
    Os06g0707200
    P0018H04.35
    P0621D05.23
    protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2
    putative HGA1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      30753139..30754971 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787752.3 → XP_015643238.1  alpha-1,3-arabinosyltransferase XAT2-like

      UniProtKB/TrEMBL
      B8B278, Q0D9N4, Q5Z8T7, Q5Z9K3
      Conserved Domains (1) summary
      cl15705
      Location:172 → 369
      DUF563; Protein of unknown function (DUF563)
    Nucleotide Protein
    Heading Accession and Version

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