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    LOC4332680 WRKY DNA-binding transcription factor 70 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332680, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332680
    Gene description
    WRKY DNA-binding transcription factor 70
    Locus tag
    OSNPB_030321700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4332680 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (11705461..11706712)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (11650711..11652139)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4332678 Neighboring gene protein ROLLING AND ERECT LEAF 2-like Neighboring gene octanoyltransferase LIP2, mitochondrial Neighboring gene tRNA-specific adenosine deaminase TAD2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WRKY DNA-binding transcription factor 70
    Names
    Os03g0321700
    probable WRKY transcription factor 35

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      11705461..11706712
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776164.3 → XP_015631650.1  WRKY DNA-binding transcription factor 70

      UniProtKB/TrEMBL
      A2XG44, A2XG48, A3AHF5, Q10M65
      Conserved Domains (1) summary
      pfam03106
      Location:34 → 93
      WRKY; WRKY DNA -binding domain
    Nucleotide Protein
    Heading Accession and Version

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