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    LOC4330107 thioredoxin M1, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330107, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4330107
    Gene description
    thioredoxin M1, chloroplastic-like
    Locus tag
    OSNPB_020639900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsTrx08; OsTrxm1; OsJ_07676
    Expression
    Ubiquitous expression in flowers (RPKM 39.8), flower buds (RPKM 36.6) and 6 other tissues See more
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    Genomic context

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    See LOC4330107 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (26166152..26170038, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (25679806..25683694, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene sphingolipid 4-desaturase DES1-like Neighboring gene putative nuclear RNA export factor SDE5 Neighboring gene E3 ubiquitin-protein ligase RMA2 Neighboring gene elicitor-responsive protein 3-like Neighboring gene uncharacterized LOC4330109 Neighboring gene uncharacterized LOC4330110

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein-disulfide reductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thioredoxin M1, chloroplastic
    Names
    LOC_Os02g42700
    P0010C01.26
    putative Thioredoxin M-type, chloroplast

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416767.1 → NP_001403696.1  thioredoxin M1, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK099517, AP014958, CI350430

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      26166152..26170038 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6H7E4.1 GenPept UniProtKB/Swiss-Prot:Q6H7E4

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