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    LOC4337881 dihydrolipoyl dehydrogenase, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337881, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337881
    Gene description
    dihydrolipoyl dehydrogenase, mitochondrial
    Locus tag
    OSNPB_050160000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4337881 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (3545426..3548919)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (3526771..3530399)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At1g09390 Neighboring gene fasciclin-like arabinogalactan protein 8 Neighboring gene protein MAEA homolog Neighboring gene ubiquitin-40S ribosomal protein S27a-2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables dihydrolipoyl dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of oxoglutarate dehydrogenase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dihydrolipoyl dehydrogenase, mitochondrial
    Names
    Os05g0160000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      3545426..3548919
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783849.3 → XP_015639335.1  dihydrolipoyl dehydrogenase, mitochondrial

      UniProtKB/TrEMBL
      B8AYE1
      Conserved Domains (1) summary
      cl39093
      Location:55 → 504
      Pyr_redox_2; Pyridine nucleotide-disulphide oxidoreductase
    Nucleotide Protein
    Heading Accession and Version

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