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    LOC4337898 arginine--tRNA ligase, chloroplastic/mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337898, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4337898
    Gene description
    arginine--tRNA ligase, chloroplastic/mitochondrial
    Locus tag
    OSNPB_050163000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 44.0), leaves before flowering (RPKM 39.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (3708768..3716455)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (3689944..3697583)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene serine/arginine-rich splicing factor RS2Z32 Neighboring gene protein REVEILLE 8 Neighboring gene PHD finger protein ALFIN-LIKE 1-like Neighboring gene pre-mRNA-processing-splicing factor 8A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables arginine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in arginyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    arginine--tRNA ligase, chloroplastic/mitochondrial
    Names
    Os05g0163000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420215.1 → NP_001407144.1  arginine--tRNA ligase, chloroplastic/mitochondrial

      Status: VALIDATED

      Source sequence(s)
      AK066161, AP014961, CB650444, CB678346, CI445666
      UniProtKB/TrEMBL
      A0A0N7KK73, A2Y0Q1, Q0DKH7, Q75IR7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      3708768..3716455
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784299.3 → XP_015639785.1  arginine--tRNA ligase, chloroplastic/mitochondrial isoform X1

      UniProtKB/TrEMBL
      A2Y0Q1
      Conserved Domains (1) summary
      PLN02286
      Location:84 → 664
      PLN02286; arginine-tRNA ligase

    2. XM_066310219.1 → XP_066166316.1  arginine--tRNA ligase, chloroplastic/mitochondrial isoform X2

      UniProtKB/TrEMBL
      A0A0N7KK73, A2Y0Q1, Q0DKH7, Q75IR7
    Nucleotide Protein
    Heading Accession and Version

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