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    LOC4342119 protein LAZ1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342119, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4342119
    Gene description
    protein LAZ1
    Locus tag
    OSNPB_060726600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsMac1
    Expression
    Ubiquitous expression in flowers (RPKM 13.3), flower buds (RPKM 10.0) and 6 other tissues See more
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    Genomic context

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    See LOC4342119 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (31777503..31783990, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (30907002..30913486, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 22-like Neighboring gene 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic-like Neighboring gene cyclin-B2-2-like Neighboring gene U-box domain-containing protein 15

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein LAZ1
    Names
    MAP kinase activating protein-like
    Os06g0726600
    P0017G10.9-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421947.1 → NP_001408876.1  protein LAZ1

      Status: VALIDATED

      Source sequence(s)
      AK058839, AK111844, AK112103
      UniProtKB/TrEMBL
      A0A0P0X199, A0A5S6R9P1, Q0D9C8, Q5Z7P9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      31777503..31783990 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785425.3 → XP_015640911.1  protein LAZ1 isoform X1

      UniProtKB/TrEMBL
      A0A0P0X199, A0A5S6R9P1, B8B2L3, Q0D9C8, Q5Z7P9
      Conserved Domains (1) summary
      pfam03619
      Location:22 → 300
      Solute_trans_a; Organic solute transporter Ostalpha

    2. XM_066311192.1 → XP_066167289.1  protein LAZ1 isoform X2

    3. XM_015785423.3 → XP_015640909.1  protein LAZ1 isoform X1

      UniProtKB/TrEMBL
      A0A0P0X199, A0A5S6R9P1, B8B2L3, Q0D9C8, Q5Z7P9
      Conserved Domains (1) summary
      pfam03619
      Location:22 → 300
      Solute_trans_a; Organic solute transporter Ostalpha

    4. XM_015785427.3 → XP_015640913.1  protein LAZ1 isoform X2

      UniProtKB/TrEMBL
      B8B2L3
      Conserved Domains (1) summary
      pfam03619
      Location:9 → 239
      Solute_trans_a; Organic solute transporter Ostalpha

    5. XM_015785422.3 → XP_015640908.1  protein LAZ1 isoform X1

      UniProtKB/TrEMBL
      A0A0P0X199, A0A5S6R9P1, B8B2L3, Q0D9C8, Q5Z7P9
      Conserved Domains (1) summary
      pfam03619
      Location:22 → 300
      Solute_trans_a; Organic solute transporter Ostalpha
    Nucleotide Protein
    Heading Accession and Version

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