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    LOC4350316 uncharacterized LOC4350316 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350316, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4350316
    Gene description
    uncharacterized LOC4350316
    Locus tag
    OSNPB_110296500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 14.8), leaves before flowering (RPKM 14.3) and 6 other tissues See more
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    Genomic context

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    See LOC4350316 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (11365543..11371297)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (10887079..10892966)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene AP2-like ethylene-responsive transcription factor BBM1 Neighboring gene succinate dehydrogenase subunit 8B, mitochondrial-like Neighboring gene uncharacterized LOC136354156 Neighboring gene uncharacterized LOC4350317

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of cytoplasmic translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4350316
    Names
    DNA-binding protein HEXBP
    Os11g0296500

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      11365543..11371297
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026021285.2 → XP_025877070.1  uncharacterized protein LOC4350316

      UniProtKB/TrEMBL
      B8BK52, Q0IT80, Q2R6R8
      Conserved Domains (1) summary
      PTZ00368
      Location:203 → 393
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

    2. XM_026021286.2 → XP_025877071.1  uncharacterized protein LOC4350316

      UniProtKB/TrEMBL
      B8BK52, Q0IT80, Q2R6R8
      Conserved Domains (1) summary
      PTZ00368
      Location:203 → 393
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

    3. XM_026021289.2 → XP_025877074.1  uncharacterized protein LOC4350316

      UniProtKB/TrEMBL
      B8BK52, Q0IT80, Q2R6R8
      Conserved Domains (1) summary
      PTZ00368
      Location:203 → 393
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

    4. XM_026021290.2 → XP_025877075.1  uncharacterized protein LOC4350316

      UniProtKB/TrEMBL
      B8BK52, Q0IT80, Q2R6R8
      Conserved Domains (1) summary
      PTZ00368
      Location:203 → 393
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    Nucleotide Protein
    Heading Accession and Version

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