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    LOC4340547 shikimate kinase 2, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340547, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4340547
    Gene description
    shikimate kinase 2, chloroplastic-like
    Locus tag
    OSNPB_060225800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SK2; OsSK2
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    Genomic context

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    See LOC4340547 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (6663153..6666062, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (6494990..6497916, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene uncharacterized LOC9271119 Neighboring gene uncharacterized LOC4340548 Neighboring gene uncharacterized LOC4340549

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of three shikimate kinase genes in rice: characterization of their differential expression during panicle development and of the enzymatic activities of the encoded proteins. Kasai K, et al. Planta, 2005 Oct. PMID 15891897
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The isolation and characterization of 3 shikimate kinase genes, OsSK1, OsSK2, and OsSK3, in O. sativa are reported.[SK1;SK2;SK3]
      Title: Identification of three shikimate kinase genes in rice: characterization of their differential expression during panicle development and of the enzymatic activities of the encoded proteins.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables shikimate kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    shikimate kinase 2, chloroplastic
    Names
    LOC_Os06g12150
    NP_001408391.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421462.1 → NP_001408391.1  shikimate kinase 2, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AB188835, CI143073, CI413543, CI443490, CI641661
      UniProtKB/Swiss-Prot
      Q0DDG0, Q5NTH3
      UniProtKB/TrEMBL
      B8B486

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      6663153..6666062 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5NTH3.1 GenPept UniProtKB/Swiss-Prot:Q5NTH3

    Gene LinkOut

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    Research Materials