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    LOC9271031 ATPase family AAA domain-containing protein FIGL1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9271031, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC9271031
    Gene description
    ATPase family AAA domain-containing protein FIGL1
    Locus tag
    OSNPB_120443800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 2.5), leaves before flowering (RPKM 2.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (15336282..15345133, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (14907790..14916631, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene UDP-glucose 6-dehydrogenase 5-like Neighboring gene proline--tRNA ligase, cytoplasmic Neighboring gene uncharacterized LOC4352150 Neighboring gene O-methyltransferase ZRP4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATPase family AAA domain-containing protein FIGL1
    Names
    Os12g0443800
    fidgetin-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      15336282..15345133 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066306687.1 → XP_066162784.1  ATPase family AAA domain-containing protein FIGL1 isoform X2

      UniProtKB/TrEMBL
      B9GD04

    2. XM_015763059.3 → XP_015618545.1  ATPase family AAA domain-containing protein FIGL1 isoform X1

      UniProtKB/TrEMBL
      B9GD04
      Conserved Domains (3) summary
      pfam09336
      Location:657 → 690
      Vps4_C; Vps4 C terminal oligomerization domain
      pfam17862
      Location:615 → 643
      AAA_lid_3; AAA+ lid domain
      cl38936
      Location:396 → 581
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RNA

    1. XR_001541815.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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