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    LOC4351590 uncharacterized LOC4351590 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351590, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4351590
    Gene description
    uncharacterized LOC4351590
    Locus tag
    OSNPB_120165000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4351590 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (3332649..3343837, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (3305189..3316506, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene protein BYPASS1-LIKE Neighboring gene uncharacterized LOC4351589 Neighboring gene uncharacterized LOC4351591 Neighboring gene citrate-binding protein-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4351590
    Names
    Os12g0165000
    WD domain, G-beta repeat domain-containing protein
    WD repeat-containing protein 48

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      3332649..3343837 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764683.3 → XP_015620169.1  uncharacterized protein LOC4351590

      UniProtKB/TrEMBL
      B8BNC3, Q0IPV8, Q2QX92, Q2QX93
      Conserved Domains (3) summary
      cd00200
      Location:32 → 364
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:88 → 123
      7WD40; WD40 repeat [structural motif]
      cd17041
      Location:626 → 747
      Ubl_WDR48; Ubiquitin-like (Ubl) domain found in WD repeat-containing protein 48 (WDR48) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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