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    LOC4345780 uncharacterized LOC4345780 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345780, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345780
    Gene description
    uncharacterized LOC4345780
    Locus tag
    OSNPB_080464000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 25.4), leaves after flowering (RPKM 10.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (22916516..22920487, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (22776965..22781261, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U31b Neighboring gene small nucleolar RNA snoR117 Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene E3 ubiquitin-protein ligase SIRP1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein-folding chaperone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of ATP-dependent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4345780
    Names
    B1111C03.37
    B1116H04.25
    Os08g0464000
    activator of 90 kDa heat shock protein ATPase homolog 1
    putative activator of 90 kDa heat shock protein ATPase homolog 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      22916516..22920487 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794872.3 → XP_015650358.1  uncharacterized protein LOC4345780

      UniProtKB/TrEMBL
      B9G1B1, Q6YUA7, Q6Z201
      Conserved Domains (2) summary
      cd08892
      Location:221 → 354
      SRPBCC_Aha1; Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins
      pfam09229
      Location:29 → 162
      Aha1_N; Activator of Hsp90 ATPase, N-terminal
    Nucleotide Protein
    Heading Accession and Version

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