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    LOC4324255 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324255, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324255
    Gene description
    protein PLASTID TRANSCRIPTIONALLY ACTIVE 7
    Locus tag
    OSNPB_010705300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 51.2), flower buds (RPKM 26.2) and 6 other tissues See more
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    Genomic context

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    See LOC4324255 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (29828284..29835028, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29240071..29246869, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene germin-like protein 1-2 Neighboring gene late embryogenesis abundant protein 14-like Neighboring gene uncharacterized LOC4324256 Neighboring gene transcription factor MTB2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in plastid transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of plastid-encoded plastid RNA polymerase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein PLASTID TRANSCRIPTIONALLY ACTIVE 7
    Names
    Os01g0705300
    P0684B02.24-1
    P0692C11.5-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      29828284..29835028 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766187.3 → XP_015621673.1  protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X2

      UniProtKB/TrEMBL
      A2ZX09

    2. XM_015766185.3 → XP_015621671.1  protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1

      UniProtKB/TrEMBL
      A0A0P0V793, A2ZX09, Q7F3A4, Q94JF1

    3. XM_066312826.1 → XP_066168923.1  protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X2

    4. XM_015766186.3 → XP_015621672.1  protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1

      UniProtKB/TrEMBL
      A0A0P0V793, A2ZX09, Q7F3A4, Q94JF1
    Nucleotide Protein
    Heading Accession and Version

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