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    LOC4343603 organic cation/carnitine transporter 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343603, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4343603
    Gene description
    organic cation/carnitine transporter 2
    Locus tag
    OSNPB_070562400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4343603 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (22703855..22711210)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22474567..22477575)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9268711 Neighboring gene organic cation/carnitine transporter 2 Neighboring gene chlorophyll a-b binding protein of LHCII type III, chloroplastic Neighboring gene myosin-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    organic cation/carnitine transporter 2
    Names
    Os07g0562400
    P0406F06.28
    putative organic cation transporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      22703855..22711210
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066312816.1 → XP_066168913.1  organic cation/carnitine transporter 2

      UniProtKB/TrEMBL
      A2YMM9, Q0D5G9, Q6ZF45

    2. XM_015790776.3 → XP_015646262.1  organic cation/carnitine transporter 2

      UniProtKB/TrEMBL
      A2YMM9, Q0D5G9, Q6ZF45
      Conserved Domains (2) summary
      cd06174
      Location:121 → 510
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam07690
      Location:121 → 478
      MFS_1; Major Facilitator Superfamily

    3. XM_015790775.3 → XP_015646261.1  organic cation/carnitine transporter 2

      UniProtKB/TrEMBL
      A2YMM9, Q0D5G9, Q6ZF45
      Conserved Domains (2) summary
      cd06174
      Location:121 → 510
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam07690
      Location:121 → 478
      MFS_1; Major Facilitator Superfamily
    Nucleotide Protein
    Heading Accession and Version

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