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    LOC4342113 ATP-dependent zinc metalloprotease FTSH 1, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342113, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4342113
    Gene description
    ATP-dependent zinc metalloprotease FTSH 1, chloroplastic-like
    Locus tag
    OSNPB_060725900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    FTSH1; OsFTSH1; OsJ_021819
    Expression
    Broad expression in leaves before flowering (RPKM 264.2), roots after flowering (RPKM 233.7) and 5 other tissues See more
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    Genomic context

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    See LOC4342113 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (30870343..30877993, complement)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene glycine, alanine and asparagine-rich protein Neighboring gene uncharacterized LOC107277203 Neighboring gene chitinase 3-like Neighboring gene chitinase 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast thylakoid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent zinc metalloprotease FTSH 1, chloroplastic
    Names
    LOC_Os06g51029
    P0548E04.20
    putative chloroplast FtsH protease
    XP_015643811.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421932.1 → NP_001408861.1  ATP-dependent zinc metalloprotease FTSH 1, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK065019, CB649653, CB664975, CI043827, CI563798, CI578645
      UniProtKB/Swiss-Prot
      A3BFJ7, B7EAD1, Q0D9D4, Q5Z974
      UniProtKB/TrEMBL
      B8B2K6

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      30870343..30877993 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788325.2 → XP_015643811.1  ATP-dependent zinc metalloprotease FTSH 1, chloroplastic

      UniProtKB/Swiss-Prot
      Q5Z974
      Conserved Domains (4) summary
      TIGR01241
      Location:173 → 676
      FtsH_fam; ATP-dependent metalloprotease FtsH
      pfam00004
      Location:269 → 401
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam01434
      Location:481 → 675
      Peptidase_M41; Peptidase family M41
      pfam06480
      Location:105 → 164
      FtsH_ext; FtsH Extracellular
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5Z974.1 GenPept UniProtKB/Swiss-Prot:Q5Z974

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