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    LOC4334816 cleavage and polyadenylation specificity factor subunit 3-I [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334816, updated on 17-Jul-2024

    Summary

    Gene symbol
    LOC4334816
    Gene description
    cleavage and polyadenylation specificity factor subunit 3-I
    Locus tag
    OSNPB_030852900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 27.2), leaves before flowering (RPKM 23.5) and 6 other tissues See more
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    Genomic context

    See LOC4334816 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (36887485..36890470, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35908705..35911711, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein ycf20 Neighboring gene pentatricopeptide repeat-containing protein At4g25270, chloroplastic Neighboring gene non-specific phospholipase C4 Neighboring gene protein TORNADO 2 Neighboring gene tetraspanin-3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    cleavage and polyadenylation specificity factor subunit 3-I
    Names
    Os03g0852900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      36887485..36890470 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776727.3XP_015632213.1  cleavage and polyadenylation specificity factor subunit 3-I

      UniProtKB/TrEMBL
      A2XP63, Q0DLP6, Q7G6G7, Q84JJ2
      Conserved Domains (3) summary
      COG1236
      Location:33471
      YSH1; RNA processing exonuclease, beta-lactamase fold, Cft2 family [Translation, ribosomal structure and biogenesis]
      cd16292
      Location:31224
      CPSF3-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 3 and related proteins; MBL-fold metallo-hydrolase domain
      pfam11718
      Location:495694
      CPSF73-100_C; Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term