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    LOC4342117 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342117, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4342117
    Gene description
    1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic-like
    Locus tag
    OSNPB_060726400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SBE; Rbe1; Sbe1; Q-enzyme
    Expression
    Biased expression in milk grains (RPKM 1736.7) and roots after flowering (RPKM 95.6) See more
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    Genomic context

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    See LOC4342117 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (31768613..31776315, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (30898176..30905822, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene chitinase 1-like Neighboring gene NAC domain-containing protein 22-like Neighboring gene protein LAZ1 Neighboring gene cyclin-B2-2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Nucleotide sequence of a cDNA encoding starch-branching enzyme, or q-enzyme I, from rice endosperm. Nakamura Y, et al. Plant Physiol, 1992 Jul. PMID 16669000, Free PMC Article
    2. Starch branching enzymes from immature rice seeds. Mizuno K, et al. J Biochem, 1992 Nov. PMID 1478924
    3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1,4-alpha-glucan branching enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cation binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycogen biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic
    Names
    1,4-alpha-glucan branching enzyme I
    LOC_Os06g51084
    P0017G10.8-1
    P0017G10.8-2
    P0548E04.28-1
    P0548E04.28-2
    branching enzyme
    branching enzyme-I
    putative 1,4-alpha-glucan branching enzyme I
    starch-branching enzyme 1
    starch-branching enzyme I
    NP_001389884.1
    NP_001389885.1
    NP_001389886.1
    NP_001389888.1
    NP_001389889.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402955.1 → NP_001389884.1  1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic isoform 1

      Status: VALIDATED

      Source sequence(s)
      CB644683, CF328664, CI357685, CI618880, D10752
      UniProtKB/Swiss-Prot
      Q01401, Q40664, Q5Z7Q1, Q7XZP9
      UniProtKB/TrEMBL
      A0A076FSW4, A0A2S0T020, A0A2S0T029, A1YQH7, D0TZI4, Q0D9D0

    2. NM_001402956.1 → NP_001389885.1  1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK068920, AK120332, CB644682, CB670827, CI518555, EF122470
      UniProtKB/TrEMBL
      A3BFK1, B7EAH2

    3. NM_001402957.1 → NP_001389886.1  1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK068920, CB670827, CI518555, CI596368, EF122470
      UniProtKB/TrEMBL
      A3BFK1, B7EAH2

    4. NM_001402959.1 → NP_001389888.1  1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic isoform 2

      Status: VALIDATED

      Source sequence(s)
      CB644683, CF328664, CI357685, CI768123, D10752
      UniProtKB/TrEMBL
      A3BFK1, B7EAH2

    5. NM_001402960.1 → NP_001389889.1  1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic isoform 2

      Status: VALIDATED

      Source sequence(s)
      CB644683, CF328664, CI357685, CI754127, D10752
      UniProtKB/TrEMBL
      A3BFK1, B7EAH2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      31768613..31776315 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q01401.2 GenPept UniProtKB/Swiss-Prot:Q01401

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials